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After a bit of testing I can get it to work if I first hold down the Ctrl key and then the Alt key. It has to be in that order.
I suspect a bug in Unity because it's not well tested on Linux. Can someone with a MAC test if the same problem exists?

Is there a way to change the keybinding used to open the detailed priorities in the work tab? This used to work great for me, but I upgraded to the latest RimWorld as well as upgrading my OS to Ubuntu 17.10. Since then, control seems to work poorly and doesn't get captured properly by the window with focus.

Now when I control click the headers it just acts as if I did a normal click.

I suspect my setup is not common (maybe?) and do not mind editing the mod files manually if it is hardcoded. Just not sure where to look. Or if anyone else on Ubuntu has this issue maybe someone else has a workaround? Right now I'm expanding all work tabs and that's just too hard to read.

I have the same problem. I'm using Arch Linux and tested it with only Work Tab and Hugs Lib installed.
Ctrl click on the headers just sorts the list and does not expand to the subjobs.